rs51105929 SNP Detail

Summary

• ID
  rs51105929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45511379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTTCTG ACTTGCCTTG
  AGAGTCTTGT TCGCTTGCAA AAATGTGCCT CTTCCAGGAA GGCTACCTGG ATTCACCTGC
  TTGCTTCCAA CTGTCCCTTT TCTATGAAAT CAAAAGTGCC CTTGAGTCTT TTTATAGGAC
  ACCTACAATT ATCAATGGAA TGTCAGAACA CCTGTCCCCT GTTTGCAGCC ACAGAGCCAC
  Y
  AGAGCGGAAA AAATCATCTG GAGTGAAGAT TTCCTTTAGA ATCTGATAAA TGAGAGAAGG
  AGGGGCAGGA GTGCATGGAC CCTCTATTCA GAAAAACAAA ACATGACAAA AACAAAAACA
  GAAAACCCAC ATACATGCAA ATTTATTCCA GGAAAGTACA TATGTGTGTG TTGTTATCTG
  TACATGTATG TTGTATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136415395	ENSMUSSNP3407494	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51105929					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45511379 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1222 bp proximal
Rr200398	regulatory region 200398	579 bp distal
Rr200399	regulatory region 200399	622 bp proximal
Rr203915	regulatory region 203915	1663 bp distal