rs51107113 SNP Detail

Summary

• ID
  rs51107113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC CTGCCCAGTT CTGTTCAGTT
  Y
  CTCGCTTGCT CGCGGCTGAG AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147628390	ENSMUSSNP5736153	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321369527	CHEV_4_137551481	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51107113					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15142	CpG island 15142	1080 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	839 bp upstream
Rr86598	regulatory region 86598	1924 bp proximal
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	1968 bp downstream
Tssr39807	transcription start site region 39807	1833 bp downstream
Tssr39808	transcription start site region 39808	1633 bp downstream
Tssr39809	transcription start site region 39809	1460 bp downstream
Tssr39810	transcription start site region 39810	749 bp downstream
Tssr39811	transcription start site region 39811	262 bp upstream
Tssr44155	transcription start site region 44155	807 bp upstream