rs51107617 SNP Detail

Summary

• ID
  rs51107617
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48990438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAGAGA AGACGTCATC
  TGAAGCACTA TAGAGTGTTG TAGCTGCCCA GTCCCTCTCA CTGCCACCTT GTACCTCATG
  GGAGCCATCC CAGGCCTGAG CCTGGAAAGA ACCTGACCTG TAACAGGACC TCTGAATGTC
  GTACCTGAGC AGGAAGTAGC AGATATAAAG CTGGGAGCCG TAGGAAATGA CAAACCAAGA
  S
  AAGTGCTACC CTTCCTGCCT CAGCTGTCTT TTTGAGACCC CTCCTGGAGA ACAGGCAAGC
  TGTGTGTCCA TTTATCACGA GCTGAAGACA GGAGGTGAAG AAGTGTAGGT AAGAAGAGGG
  TGTCTGGTGG TTCTAGAAAG TACGATTGAG GCGGGGTAAA ACTGATTCCG CTTACAGAAC
  CTTTCTGTCT TGAGTTTACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62763746	NES17344124	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51107617					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763746	NES17344124	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48990438 () rs orientation: forward

Symbol	Name	Function Class
Tssr148548	transcription start site region 148548	440 bp upstream