rs51109283 SNP Detail

Summary

• ID
  rs51109283
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTAA AATCCATCTA TTCACCTTCT ATTGAAAGAT
  GTTATAAACT TTCAAGCTAA TCAAGATGGC TTTTTAAAGG CCAGGGGCCT TGTAACCAGT
  AACACCAGAG TTTCAGAATG AGCCACAACC TTCATGAATA GCGTGATATT TGGAAGGACC
  S
  GCTTGAATCA AGTTTGCTTG GCTGGAACCC CTGGACATAG TATAGACCCT TGAAGGAGAT
  TTGAGAACTG GGTTCTAACC CTGGCTTTCT TAATACCAGC TGTGTGAGCT TCCTAGGAAT
  TCGTACGGGC TGTTTTATTC ATCTGCAAAA TGATTCCGTG CAGGCCTCCA AAACTGTAAT
  AGGAACTTTC CTTTTCCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014957	ENSMUSSNP6817110	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51109283					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	766 bp proximal
Met	met proto-oncogene	1251 bp upstream
Rr626799	regulatory region 626799	761 bp proximal
Rr626800	regulatory region 626800	925 bp proximal
Rr626801	regulatory region 626801	968 bp proximal
Rr626802	regulatory region 626802	1500 bp proximal
Tssr55050	transcription start site region 55050	883 bp upstream
Tssr55051	transcription start site region 55051	1006 bp upstream
Tssr55052	transcription start site region 55052	1200 bp upstream
Tssr55053	transcription start site region 55053	1277 bp upstream
Tssr55054	transcription start site region 55054	1336 bp upstream
Tssr55055	transcription start site region 55055	1352 bp upstream
Tssr55056	transcription start site region 55056	1378 bp upstream
Tssr55057	transcription start site region 55057	1543 bp upstream
Tssr55058	transcription start site region 55058	1583 bp upstream
Tssr55059	transcription start site region 55059	1622 bp upstream