rs51111101 SNP Detail

Summary

• ID
  rs51111101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20417678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGAAT TTCTGGTTTC
  TGGTATCTTC CCATGAATCC AACTGACAAC TTAAAGCTTG TTTTTTCCTG GTGTTGGGGA
  TTGAATCCAG AAGTTTGTAC ATACCACTAA TTCCATTCCC AGACTAAACG TAGCTTAAAA
  AAAAAAAAGT GATTTTGTCT GTGTGGGAAG TACTGGTCCT ATGGCACATA TGTTGAAGTC
  R
  GAGGACAACT AGCAGGAGTT TACTCTTTTC ACCATGTGTA GAAGTCAGAG GACAACTTTT
  AGGAGTCTTT CTTCCACTAT GAATTTTGAG GAAGGAACTC TGGTCATCTG TTTTCTTTAT
  AAGGCAAGTA CTTGCTATGT AGTTACCAAG GTTGATGTAG AACTCACAGA TTCTTGCTTC
  CACTTCTCAA ATGCTACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134095068	ENSMUSSNP7106834	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51111101					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20417678 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	within coordinates
Tssr160646	transcription start site region 160646	1722 bp downstream
Tssr160647	transcription start site region 160647	1643 bp downstream
Tssr160648	transcription start site region 160648	884 bp upstream