rs51111198 SNP Detail

Summary

• ID
  rs51111198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AGCCATTTGC TCTCGTGCTC
  R
  GGGAAGAGAT CGGACGCCTA CCTCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149148144	ENSMUSSNP4317536	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321658431	CHEV_5_117544897	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51111198					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232953 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	127 bp distal
Rr618555	regulatory region 618555	264 bp distal
Rr618556	regulatory region 618556	1509 bp proximal
Rr618557	regulatory region 618557	1874 bp proximal
Rr618558	regulatory region 618558	1979 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron