rs51111441 SNP Detail

Summary

• ID
  rs51111441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125219590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCAATG CTTGAGAAAA
  TTTATTTCAC CATATTTGAT TATAGCTTGT TCCTTATTAA AAAAAATCAT CAAAGTATAA
  AAGTTCACAA AAGTTAGCTA CGTGATTAGG CAAGCTGTGC ATTAAGAAAA ACACGAAAAC
  CTGTGCAAAA ACAAATGCAA ATTCTGACGC AGCAGACCAC ATAAGCGATA TACAATTAGC
  K
  GCTCCCTAAG AAAGTGAGAA ATAGAATCGA CTAAAATGTA TTAGGTATGA AATTAAGACT
  TAATTAATGT TTTAACATTA AGACTCCCTG ATCTCTCCTA ATGTCGACAG CATAGTCATC
  TCAATAGAGT TACATTCACT CTGTGGACTC ATCTAGCTAG TACTATCCTT CCTCTTTAAT
  CTTTATGTGG AGAACAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135808271	ENSMUSSNP5936214	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320936339	CHEV_3_125128859	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51111441					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125219590 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	236 bp proximal