rs51112541 SNP Detail

Summary

• ID
  rs51112541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTAATAA TTAAATGAAT TATTTACACA ACAACATGGA
  GGGTGATTTT CTTGGTAGCC TCGAGGAGAC TGGGCTAGAG GAAGCCAACA TTAGCAAGGA
  K
  TTGACTGGTG TGACTTTAAC TGCCATTCTG TATCTCTTCA CACTCAGGGT TGAGCATTTC
  TGTCCAGGTA CCAGCTTCTG ATATACCTCA CATCACAAAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62737814	NES17343045	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51112541					SNP	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737814	NES17343045	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670081 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	1261 bp upstream
Rr527086	regulatory region 527086	771 bp proximal
Rr527087	regulatory region 527087	1272 bp proximal
Tssr144671	transcription start site region 144671	830 bp upstream
Tssr144672	transcription start site region 144672	1132 bp upstream
Tssr144673	transcription start site region 144673	1173 bp upstream
Tssr144674	transcription start site region 144674	1196 bp upstream
Tssr144675	transcription start site region 144675	1233 bp upstream