rs51113698 SNP Detail

Summary

• ID
  rs51113698
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCCGAG CCGAGGGGTG
  GAGCAGCACG GGCAGAGAAA GTTCCCATCT GCTGGCGCTC CAGCTGCTGC AGTCCCCTTT
  CATCCCCGGG CACCCCGGCC AACACTCCAT CTCCGGACCT CCCCCTCTCC CGTGTCTCAG
  ACACAACGTA GTAAACACCC GGAGTCCCAG GCAGCGCGCA CCTCCCCCAG GCCTGCGGAG
  A
  ACATCCCGGC AGGTTATGAA TGGCCTCACT ATACCCAGCT CCTTTTCACA CGCGGGCACG
  CGCACACGCG CGCCCCGGAG GCGAAGATTT AATACCCCCG GTCAGAGCAA CGGCCAACAG
  AATCAATGGC CCTCCATCAG AGAGAGAGAA AGGAAGGCGC TCACGCTTCC CAGGCCTCAC
  CAAAGAGGTT CTAGACCGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387943	CHEV_4_141092916	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51113698					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	within coordinates
Cpgi15234	CpG island 15234	418 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	within coordinates
Rr603787	regulatory region 603787	1586 bp distal
Rr603788	regulatory region 603788	196 bp distal
Rr603789	regulatory region 603789	1438 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	1433 bp downstream
Tssr44322	transcription start site region 44322	1561 bp downstream