rs51115317 SNP Detail

Summary

• ID
  rs51115317
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAAAACCC AGGGCCTTGG GCTTGACAGG CAAGCACTCT
  ACCATTGAGC TAATTCCCAC CCCCCTTTTA TTCTTTTACT GGGCACTGAG GCCTCCCAGC
  W
  CTTCCTGCTC ACTCCATTTG GCGGTAGCCA TGGATACATT TGAACTTGGT AAGACTCTGT
  GTTCCCACCT AAGTACCCAG AGCTACCATA AGGAAGGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120010228	PARCsnp_1.07381	PARC_SEQ	INBRED	f	SNP		T	A
ss146183794	ENSMUSSNP4064384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320123190	CHEV_1_174135053	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs51115317					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1286 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	within coordinates
Rr423484	regulatory region 423484	54 bp proximal
Rr423485	regulatory region 423485	555 bp proximal
Rr423486	regulatory region 423486	1872 bp proximal
Tssr294	transcription start site region 294	1706 bp downstream
Tssr295	transcription start site region 295	1758 bp downstream
Tssr296	transcription start site region 296	1834 bp downstream
Tssr297	transcription start site region 297	1865 bp downstream
Tssr15164	transcription start site region 15164	1732 bp downstream
Tssr15165	transcription start site region 15165	1762 bp downstream
Tssr15166	transcription start site region 15166	1853 bp downstream