rs51115713 SNP Detail

Summary

• ID
  rs51115713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80036330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTTAAC CACTGAGCCA
  TCTCTCCAGC CCATACCTCT TCCTTTGAAG AGACAGCCCT ACATGTTCAA CATTCGACGT
  TTCCCTAGTG CTTATCTGTG GGTGCAGGAC CTCCGTGTAC CCAGTATCTG CAGCCCCATG
  GCTGCTTCTT CTGAAAGAAA TTGCCTGGAG TGAAGGCCTG CTCTGCATTC TCAAAACCAG
  Y
  AGGAAGCTGG ATGATGGGGA CATTGGGATT TAAGGCCAAA GGAGGGACCA TCAGGGGACC
  CAAGAAGGTA TCACATACGG TGATACATGT CACCGTGAGG ACTCAGTAGC CATCCACTCA
  TGGTGTCCCT GACTCCCTTC CTCCTCTTAG GATTTTCTTA GGGATCAGCT TGTAAAACAT
  AAAACAGCTG ATAAGTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569822	NES17023159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51115713					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569822	NES17023159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80036330 () rs orientation: forward

Symbol	Name	Function Class
Rr304352	regulatory region 304352	130 bp distal
Rr308002	regulatory region 308002	271 bp proximal
Rr314586	regulatory region 314586	1930 bp distal
Rr314587	regulatory region 314587	1871 bp proximal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates