rs51118872 SNP Detail

Summary

• ID
  rs51118872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105247829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTCTATG TATACAACAT ACACATTTTG TCCTATGCAA
  AGAAACAATG CCTGAGACAT CTCAGCTCAA ATCTGAGACT GCGGTGTGAA CTTCAGTGTG
  Y
  TCACTCTATG TACAAAGTCT TATTGCTCTT TCAAAAATAT AACAGCGAGA CTACAAAAAA
  AAATAAACTA AGAAATTTTT CCTATTCTTT AGCACACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147499361	ENSMUSSNP39522	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323448202	CHEV_10_104849024	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51118872					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105247829 () rs orientation: forward

Symbol	Name	Function Class
Gm66627	predicted gene, 66627	1327 bp upstream
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates