rs51118921 SNP Detail

Summary

• ID
  rs51118921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127431043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGATCCT GTCGGTAGAG CCATGGGTTA TGGATGCTTA
  GGAGCCGGAG CCATGCTGGA GGTAGTGAGT CTGTGGAGGT GGGCTAGGGA GCTTCATCAC
  Y
  TGCCTTCCAC GCCTGATCAC CTGCTTCCGG GGTGTGGATG TGGTTTTCTG CCGCCATGTC
  TTCACTGCTT GCTGCCATGA CTTCTCTTCC ATGGTGGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535381	ENSMUSSNP5207118	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51118921					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127431043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	1099 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564564	regulatory region 564564	1891 bp distal
Rr564565	regulatory region 564565	1013 bp distal
Rr564566	regulatory region 564566	1542 bp distal
Rr564567	regulatory region 564567	530 bp distal
Rr564568	regulatory region 564568	951 bp proximal
Tssr20024	transcription start site region 20024	1860 bp downstream
Tssr20025	transcription start site region 20025	1844 bp downstream
Tssr20026	transcription start site region 20026	1693 bp downstream
Tssr20027	transcription start site region 20027	1198 bp upstream
Tssr20028	transcription start site region 20028	1619 bp upstream