rs51119945 SNP Detail

Summary

• ID
  rs51119945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71640625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTG CACCGCCAGA AGCTTTCTAC
  S
  GGTCCCCTTC CAAGCCCCAC TGCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132393499	ENSMUSSNP6625356	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss323743709	CHEV_11_71563301	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51119945					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71640625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	619 bp proximal
Rr236016	regulatory region 236016	within coordinates
Rr241547	regulatory region 241547	825 bp distal
Rr247127	regulatory region 247127	within coordinates
Tssr102813	transcription start site region 102813	115 bp upstream
Tssr102814	transcription start site region 102814	881 bp upstream
Tssr102815	transcription start site region 102815	1183 bp upstream
Tssr102816	transcription start site region 102816	1199 bp upstream
Tssr102817	transcription start site region 102817	1257 bp upstream
Wscd1	WSC domain containing 1	121 bp upstream