rs51120003 SNP Detail

Summary

• ID
  rs51120003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCATGT CTATCAATTC
  TACCCCTACT GAATCAACAG GAGAAGAAAA AAAAAATCCA AAAAGTTCTG TAGGGTGGAG
  AGAAATCCTG GAATGAGAAA CTCATGCCAC TCTAGAGGAC AGGCTGCAAA GATGGAAGAA
  TCCAGGAGTG CCTGGAGATC CCTTCCCAAC CGAGAAAAGG AAAGCTCCCA GGAAAAGGCT
  R
  AGATAGGAGC TTTAGAACTG GGCAGGAGTG TAGGTGTGGG TGTGCGATTC TGCAGTCACT
  TTCTTAGCTT CGTATTCTTG TTATTTTAAC ATTGAATTCA GCTATGAATT ATTATTTCTT
  GTCATCTATA TTTACTAAAG CTAAGCTAGG TGTGGTAACA CAAGCTTGTA ATCCCAGCAC
  CTGGGAGGCA GAAAACAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148125003	ENSMUSSNP4961944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321444913	CHEV_4_155423458	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51120003					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133806 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	995 bp proximal
Rr106662	regulatory region 106662	383 bp proximal
Tssr44999	transcription start site region 44999	1377 bp upstream
Tssr45000	transcription start site region 45000	1116 bp downstream
Tssr45001	transcription start site region 45001	1149 bp downstream
Tssr45002	transcription start site region 45002	1384 bp downstream
Tssr45003	transcription start site region 45003	1413 bp downstream
Tssr45004	transcription start site region 45004	1436 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates