rs51121146 SNP Detail

Summary

• ID
  rs51121146
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60057065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGATGA GCAGTCATGT
  ACCTACAGTA TCTTTTCAAC TACAGAGGTG TGGGAATCTC AACTCTTACA TTGCTATGGC
  CCATGATAAT TTATGAAGCA CCATCAGAGG CTTCTGGCAT GATCTTTTTC TGTGGGTATC
  TGGGATAGTT CTATTTTGTT GCTGATAAAG CCCCCTGCCC TAATTTGCTG GTGATAGTTA
  K
  GAGGTGTCAG AGTATAAACA CAATCAACTA GAGAAGGCAG AGTTATAAAG TCTGTGCTTG
  CCATTACTTT AAAAGTTTGA AAAGTAAAAG ACCTGATGAA AGTTAACCAC AAAATAATGC
  AATTGATGGG GAAATATGTC TGACACTTAC AGTCAATTCA AAAGGTTTAG GCTAAATATA
  CATGCATGGA AAGATTAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560014	NES15632554	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51121146					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560014	NES15632554	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60057065 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1601 bp upstream
Tssr4605	transcription start site region 4605	1988 bp downstream
Tssr134460	transcription start site region 134460	1670 bp downstream
Tssr134461	transcription start site region 134461	1811 bp downstream
Tssr134462	transcription start site region 134462	1898 bp downstream
Tssr134463	transcription start site region 134463	1958 bp downstream