rs51122978 SNP Detail

Summary

• ID
  rs51122978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:34572731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATCGGG TGGACAAAAA
  AAATCTCGAG ATAATATTTT GGCCCAGAAT ATTTATAACT TCTTAATAAA AAAAATCATC
  TTGGCAGTAT GGCTTGTGAT AAGGAGATAA ATGAGAAGTA CTGAGCTGCA AGGGTCCCAG
  GTTTCACCAA TTTATTTCCT TCTCCCACAC AGGTGGCACC AGGTGCTTTG TACTAATGAA
  Y
  GGGTTTTTAA TGATTCTGAA GTGAATTCCA GAGTCTTGTT AATGCCTCAG TCACAAAGGA
  ATACGAGGCT GCAGATGCCT TCATCTTCTC TGAGTCCCCA GAATCTGAAG GCTCAGACCT
  TGAATCAACT ATTCTCACCT CCAACAAGTG GCTGAATTAT TTTTACTCAG TTTCTATCAC
  ACAAACACAC ACACACATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61376697	NES16749590	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51122978					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61376697	NES16749590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:34572731 () rs orientation: forward

Symbol	Name	Function Class
Kirrel3	kirre like nephrin family adhesion molecule 3	within coordinates
Rr194528	regulatory region 194528	531 bp distal
Rr203599	regulatory region 203599	495 bp distal
Rr208757	regulatory region 208757	1959 bp proximal