rs51123242 SNP Detail

Summary

• ID
  rs51123242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94354141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGATTT TACCTCAGTT
  TATGCCTCCC ATGTCTTTAT TGGTATATCA GGTAATTTAA ATGGTTAAAC ATTACAGACA
  GATCTTTCCC TCGTTGCCCA GTTTGAAGAG AACTGAGTGA TAAATCTCAG ATGTAGTATC
  TTTTCTTACT GAGTACTAGG TAATCTCAGA TGGTGGTGGG ACCTGCTCAT TAGAAGCAAT
  Y
  ACTCATAGGC ATGGAGGGCC ATCAGGGTTT GATCTTTTCA CTTGGCCTCC TCCCAAGAAG
  AGGGGCAGAG CAGTGCACAG GCACTAGTGT GCTTGTATCC ACCAGTTAGT TAGATCAGGC
  TACCTCCCTG CTGGAACATG TGCATTTGGC TAATGTGGCC ACAGCAGTGT GGCAGAGCCA
  ACTTCCTTAT CTGGAGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60514790	NES16523635	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51123242					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514790	NES16523635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94354141 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	within coordinates
Rr392165	regulatory region 392165	497 bp downstream
Tssr139557	transcription start site region 139557	1058 bp downstream