rs51123520 SNP Detail

Summary

• ID
  rs51123520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14915223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAGTGT GGGAATCCTG
  CAGTGAGAGG CAGTCCTCGT GGTTATCAAG ATAGGGTGGG GGCAGCTTAG AAACTCAGTG
  AGAATCAGAG GGCCAGACCT AAGTCCATGG GGGTTAAAGC CAGTGCCAGG GTGCATGGTA
  GCTGGATGGG ATGGGGCTCA TCACACAAGG AAAGCAGTCA ACAGGAAAGA CTTGGTCAGG
  Y
  GGTGATGCAC CAGAGCCCAA AGAAGATGGT AGATTTGTGG CATCTCCCAC AACCTCCTCT
  TGGGCTTCAT TCTTCATAGA CGACACTCAA AGCTTTCTGG ACATTTATCT GGTTGACACC
  TGATAATAAA TAAGTCAGGG CTTACTTCAA GAAAAGGAAA GATAAATTAA ATAGAGAAAG
  TACTTAGCCA CTTTCTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540258	NES16561556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51123520					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540258	NES16561556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14915223 () rs orientation: forward

Symbol	Name	Function Class
Thbs2	thrombospondin 2	726 bp upstream
Tssr146500	transcription start site region 146500	862 bp upstream
Tssr146501	transcription start site region 146501	719 bp upstream