rs51123757 SNP Detail

Summary

• ID
  rs51123757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20159527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATAATG AAATATTTGG
  ACCTATTTTA ATTGACCATG CTATTTGAAA ATGGTTTCTT CTAACAGCAG ACAACCAGAA
  GACTAATTCT CACATAAAGT AGTTGACTTG GGAAGAGCAT GAAAAGTCTC ACCCACCTAT
  TCATAAATAT ATACCGAAGA AAACACACTG TTATCCACAC ATAGTTATAT TTGCAAACTA
  K
  CTTATGCAAC CCAAAGGTTC TGATTCCAAT TAACACAGAC TAATCCACTC AACTGATTTT
  CCCCAGGTAT GGTGTCTCTA TGCCTATAAT CACAGCTACT CCAGAGGCTG AGGTGAGAGG
  AATTGAATTA GGGAGTTCAA GGTTAGCCTG GGCAACATAA CAAGATTTAC CTGACCATCC
  CAAAACAAAC GTGAGCAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134095017	ENSMUSSNP1829736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51123757					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20159527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22643	CpG island 22643	1104 bp distal
Rr690378	regulatory region 690378	991 bp distal
Slc9a7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	1481 bp upstream
Tssr163067	transcription start site region 163067	1513 bp upstream
Tssr163068	transcription start site region 163068	1454 bp upstream