rs51124342 SNP Detail

Summary

• ID
  rs51124342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124021289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAGTGTT ATGAAGTGGA
  GAGTGTTTGC TATCTATCTC TCTGCTCTGT GGAAAACTTA CTGTAACAGA GTTTATCACA
  AACAATCCCC AGGAATAGAA GACACTGTGA GAGTAGGAGA AGCCATCACA TACATTTACT
  TCCTCATACT TATTGGAAAA AAAAATATGG ATAGTCTAGT TCAAAGTGGG GATGAATCAA
  R
  TACAGGTACA GATATTCAAT AGGAAACAAT TTCATTTTAT CTTATTGATT TTTGTCCTTT
  TTATAAAAAA GAAAATGAAG TATCTACAAC TTGTTCCTAA GACCTGTACA CAATGAAAAT
  ATAATGATCT ATGAGTAGGA CATTGGAAAG AAATAAAAAT GCACCAAAGT ATGTTTAATC
  AGCTGGCAAG AGCCCCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445837	NES15938655	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	A	A	A		G	A	A	G		A
ss135782658	ENSMUSSNP3680911	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320926432	CHEV_3_123930558	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51124342					SNP	A	A	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445837	NES15938655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124021289 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1440 bp distal