rs51124715 SNP Detail

Summary

• ID
  rs51124715
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130970858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTGGA CTGAATTGAA
  AGCAACAAGC AACTGGAACA CCAGCATTCA TCTTCCTCTG CTTCCAGTGG ATCCAATGTG
  GCAATCGGCA TCATGTTTCT GCTGACATGA TTTTCCTGCC ACATCCCACT GTACCCTTGA
  ACACCGAGGC AAAACAAAAG CTCAAACTGC CTTTTGTGGG TAATGAGAAA CATAACTAAT
  W
  TGGTGGCTGA AGATGGAAAT GTATTTTGAA GAGAAAATGG AGGAAGCTGG CAAGTTGAGG
  GTAAAGAAGA GGCAAGAACC AAGGGAAACA GGTTAACTGG GTAGACAACA GTGCTTTCTA
  TTACTTTAGT GGAAAAGAGG AGAGCAAACT TCATAGTTTT TTTTTTTGAA GTAATGAACT
  TGATCTAGGG TCAATAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61067241	NES16057266	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51124715					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61067241	NES16057266	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130970858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19815	CpG island 19815	1795 bp proximal
Gm73326	predicted gene, 73326	within coordinates
Pstk	phosphoseryl-tRNA kinase	1985 bp upstream
Rr400669	regulatory region 400669	1839 bp upstream
Rr656446	regulatory region 656446	1576 bp proximal
Rr656447	regulatory region 656447	1961 bp proximal