rs51126621 SNP Detail

Summary

• ID
  rs51126621
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93988714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCGCTCA ACGTTTGGCT
  CCGCCCACAA GCTTTACCTC GCACCACCGA AGCGCAGGGA TCTCTCATTG GCAGAGGCGG
  CCCTTACGAC TGCGGAAGGC TGCGCGCTGA TTGGCCAGTG ATACCTAACT GGGTTTAGCT
  CACATTTCAG GAAGGAATGG AACCGGAAAG GGAAGAATAT AGTAGAAGTC CGGGAGGAGC
  W
  GGAGTAGTGC TTGTGATTAC GTCTTAGTAA TAACCGCTTT CGGATTGTTA ATTCCTCAGA
  CTTTTCAGAT GAAGGTTTAC GGTTCCCCTT TGTCTGCAGA GCACGCTTTC GCTCCATTTT
  TTTGAATGAC TGCCTTAGCT CCCACAATGA ACTTTATACT TGTTCCCAAT AATTCGGAAT
  TCCAGAAAAC TCTACTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146951426	ENSMUSSNP2038489	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51126621					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93988714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	within coordinates
Gm39885	predicted gene, 39885	within coordinates
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	460 bp upstream
Rr57226	regulatory region 57226	within coordinates
Rr367242	regulatory region 367242	within coordinates
Tssr25319	transcription start site region 25319	454 bp upstream