rs51126652 SNP Detail

Summary

• ID
  rs51126652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGACAC CACAGTGGGT
  TAGGTTCTCC CCATTGATCA CTAATTGAGA AAATGCCTTA TAGCTGGATC TCATAAAGGT
  ATTTCCTCAG CTGAAGCTCC TTCCTCTCTG ACTTTGTGTC TGGTTGACTC ATAAAGCCAG
  CCAGTATACT GGTTTATCCT GAAATTCTTT TCTGTCTTTC CCTGAGAATA GCTCCAAAGA
  R
  TGGCTGCTCC TCAGAATATT CTCAGCTGTG TCTCCTTTCT GCTGCTGCTG TTTCCAGATG
  TAACTAACAG ATGGCTCTGT AAGATTAGTA TTTGCAGAAA CTGAACACAG GGTGGCAATG
  TGTCATTATT AAAAATATTA ATGTAGTTAT TCACTTTCTG AGAAACAGCA TAAGTGGAAA
  TTTACACACA CAAGAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135206855	ENSMUSSNP2382986	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs51126652					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411239 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	469 bp upstream
Rr375034	regulatory region 375034	211 bp upstream
Rr577237	regulatory region 577237	1591 bp distal
Rr577238	regulatory region 577238	101 bp proximal
Tssr29204	transcription start site region 29204	1633 bp downstream