rs51126740 SNP Detail

Summary

• ID
  rs51126740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126421982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAATGTCCT TTGATTTATT TCTATAGAAT
  ACGTTAGCAT AAGTGCATAA ATTCGTGCTG GATGATAGAC ATGTGGATTA CCTCAAGAGT
  TATTTTTTTC TTTTAAGTCT AATAAAAAAA TAATAGTATT CCCAGAGACA AATGAAAAAG
  Y
  CGTGAAGCAT GAAAGAATAT AAACAGAGGG ATTATACCTC ATTTTGTATA TTTATTTCAA
  ATTCTGGGAA ACATTCAATT ACCTGGAATG ACCACATTTG TTGAAGAAGT AACTTGATAG
  AGAAGTCACC AGCAGAAAAG TTGAAAAGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60794528	NES16466534	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	C	C		T	C	C	T		T
ss145430027	ENSMUSSNP4023994	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss319961023	CHEV_1_128390822	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51126740					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794528	NES16466534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126421982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	1414 bp distal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	1514 bp distal
Rr417490	regulatory region 417490	1828 bp distal
Rr417491	regulatory region 417491	1010 bp distal
Tssr13401	transcription start site region 13401	1521 bp upstream
Tssr13402	transcription start site region 13402	1441 bp upstream
Tssr13403	transcription start site region 13403	1397 bp upstream
Tssr13404	transcription start site region 13404	1371 bp upstream
Tssr13405	transcription start site region 13405	1294 bp upstream