rs51129422 SNP Detail

Summary

• ID
  rs51129422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCAGTG CTAAAGCAAC
  ATCTCTTATA TCAAGGCACA ATGCCTAAGT GTCCAGCCCA CCGTTTCCTA TCCATCAGAG
  CAAAGAAGCA GAAGGATGCA GGCCCATCCT CCTTGGGCTT GTACATTAGC ATTCCAAGTC
  CCACTAGACC AAAATCAGGC ATTGTGCTCT GAACCACTAA AGAAAATGAG ATCAATGAAA
  R
  TTGTATCCTT TCTGTGGCTT TGCTACCTGA GGCTTCCAAA GTTTAGGCTT AAGGCAAACA
  CAGTGGGTCT AGCAGGTATG TGCTTACCTC TTATGCCATT AACAATCTCA AGTTGCTAAG
  TGAAAGAAGG ACCCAGAATT CCACAGCTGA CTAGGTTATC ATGCTTAGCA AATGAGCAGT
  GAAAGCCACG CTTTAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341893	ENSMUSSNP402913	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51129422					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584380 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	990 bp upstream
Rr405932	regulatory region 405932	532 bp upstream
Rr546756	regulatory region 546756	500 bp proximal
Rr546757	regulatory region 546757	1001 bp proximal
Tssr156136	transcription start site region 156136	543 bp upstream
Tssr156137	transcription start site region 156137	947 bp upstream