rs51130453 SNP Detail

Summary

• ID
  rs51130453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53520195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATGATT GAAAGTAGAC
  TCACTCTGGA GAAGGTTGAA GCGGCCTGAG GAATTGCTAG CACTCTTGCA ATCCGAGTGA
  GGCACAAGTG AGCCAGCAGA GAGGAATGCT CTGTCTCCAC ACCTCCGATG GGAGTGGGCG
  GAAGGCAGAG ACCTAATCTC CTGACCCCAG CCTGAAGAGG CAAGCCCTGT GTGCTCTGCC
  Y
  GTTTCGTGTT AGGTTGTAAG CAACACCTCT TTCTGCCCCT CCTGCCCGCC ATCTCTAAAT
  GGTCTGTTTA AAGCCCAGAG ACGAGGCAGC CCTATAAGGC CTCTCTTCCT TTAGTTTGGT
  AGTGCTTGGG CTAGTTTTTC TCCAAATGCC TACAAACCTC TTATTTTGTT TCCTGGAACC
  CAAACTGTTG AACACAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63284358	NES17498681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51130453					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284358	NES17498681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53520195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11064	CpG island 11064	1569 bp distal
Dusp5	dual specificity phosphatase 5	Intron
Rr549549	regulatory region 549549	1619 bp distal
Rr549550	regulatory region 549550	within coordinates