rs51131139 SNP Detail

Summary

• ID
  rs51131139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85273344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAACTCCC TTTTGTGTGT TTATATCATC AGATTTTACA
  CTCAAAGATA CATCTAAGGT TTCTGAGGAA AAAAAAAAAC AAAAACAAAA ACCCAAGTTT
  K
  GTTTTAAGAC GGTGTGATTG CTATTCTTGG TTGTCAACTT GACTACATCT AGAACTGACA
  AAAACCCAAA AATAGAGTGG CACATCTGTG AGGGATTTTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52675567	NES15491936	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51131139					SNP	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52675567	NES15491936	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85273344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	1474 bp proximal
Gm4076	predicted gene 4076	1325 bp downstream
Rr388812	regulatory region 388812	1788 bp upstream
Rr483356	regulatory region 483356	1541 bp distal
Rr483357	regulatory region 483357	1288 bp proximal
Tssr4134	transcription start site region 4134	1623 bp upstream
Tssr120547	transcription start site region 120547	1339 bp upstream
Tssr120548	transcription start site region 120548	1465 bp upstream
Tssr120549	transcription start site region 120549	1510 bp upstream
Tssr123349	transcription start site region 123349	1405 bp downstream
Tssr123350	transcription start site region 123350	1761 bp downstream
Tssr123351	transcription start site region 123351	1862 bp downstream