rs51133218 SNP Detail

Summary

• ID
  rs51133218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGATGAA GCAGACTCAT
  GGTAAGTACT GGGCATCCTT CACGCCTATG ACCCAGCAGG AAGGTGTTTT GTCCACCTAC
  ATGAGAACTT GGGGTAGAGA CAAGGCCAGG ACACAGTCAT ATCTAGCTGT TCACCCCTGT
  GCTTTTGTGG AAAACTGTCT TGGTGTGTTA CTCCAAAGTC CTCTGCCACC TGCCACCGCT
  R
  CAGCTCTGTG GGACTTCTCA CTTAAGGGCA AGATTGAGCT GCATAGAGAC AGGCATCCAG
  CATTCATTGT TCTCTAGTCC ATCCCCTGGT TACAGACCCT CTGGCCTTCC CTTCTAGTGG
  GAGATGTATA GGGAGGAATG TATCTGCTTA TGAATGAATG TGAGTCCTTA GTTGCCTGGG
  GCACGTGAAG AAAAGGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651855	NES15472006	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		G
ss324417484	CHEV_13_70981004	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51133218					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651855	NES15472006	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990245 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	315 bp upstream
Cpgi5821	CpG island 5821	286 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	410 bp upstream
Tssr123159	transcription start site region 123159	372 bp upstream
Tssr123160	transcription start site region 123160	343 bp upstream
Tssr123161	transcription start site region 123161	316 bp upstream