rs51134727 SNP Detail

Summary

• ID
  rs51134727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51633054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGATATA AAAAAAGAAT
  GAACCTTAGC TACACACAAC AATGCGGATG AATCTATAAA TATTTGTGCT GAGTGAAATA
  AACCAGACAA GAAAAAAAAA AAAAGGAGAA AAAAAGCTTT CATTTACATA AAACCCTAGA
  AGGAGGACCC TAGCAAAGAT AAAGAGATTT TTCCCCCTGG GGCATTGTGA AACTTTCAGG
  R
  CGAGAGATGT GATTGAGCTG ATAATTTCCC TGAGTAAATG CATACGTCAA ACCTTATGAC
  ACTCTACACT TTAAGTATGT GACATTTACT ATGCAATTCA GTCTCAACAA AGTTATCGAA
  AGAAAAGAAA GGAAACAGAC AAGGAGCTGG GGGAGTTTGG AGATCTGCAA AGATAGCTGG
  ATGGAAAATC TAACTGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149111931	ENSMUSSNP4645235	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51134727					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51633054 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	103 bp upstream
Rr410724	regulatory region 410724	within coordinates
Tssr6634	transcription start site region 6634	98 bp upstream
Tssr6635	transcription start site region 6635	275 bp upstream
Tssr6636	transcription start site region 6636	353 bp upstream