rs51135491 SNP Detail

Summary

• ID
  rs51135491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46247003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCACCCA TTCCCACAGC
  TGGTGATTCA CTAGCGACAA AATCCTTTGC TTGAGGCTGG AGACCCGAGT CTGGGAGATC
  TCAGTTTACT GTTGCTCTTA CCTGCCCGCT CGCTCTCTCC AGGAGCCTAG CTACACAGGC
  CCACACCCTC TGCTCTGGCT CCGTGGGCAT CAGGGCCCTT TCCAGCTCTG TATTTGACTA
  Y
  GCTGACTTGT GCTTTCAGGC CTACGTCATC AGTGGCTTCC TCCCTGAAGC CTCCTCTCTC
  CCTTTCCTGG GCTGACATCT TTCCAAGTTC CAAAGCTACT TTCCAAACCC TCAGGCCCGG
  GTCTTGCTAA GCTCTGCGCT GTCTCCTCCT TCTGCATCCT ACTCAGGGAC ACAAATGAGG
  TGTACATGAA ACTGTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61392180	NES16761248	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51135491					SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392180	NES16761248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46247003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21707	CpG island 21707	649 bp distal
Rr383308	regulatory region 383308	1884 bp upstream
Rr678124	regulatory region 678124	1736 bp proximal