rs51136569 SNP Detail

Summary

• ID
  rs51136569
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152601288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTACTT TATACATGAA
  CAGAAACTGA GATAAAAATG GACAACTTCC TAGGACAATG TAATTTATCA AATATAATCC
  AGATTCTAAA GAAACCTAAT GGTCTACATT TTATAGGAAA ACAAAACTAA AGATGTAAAG
  AACCATCTGT TCCCGGAAAA GATGAGCACA GGACACAGGC TCAGCCTCTG AGGAGCCCTC
  T
  AACTCAGGAA GACAAATGCC TTTGCTTATT CTCATATGTG GGACTTTGAA AGTACATGCT
  CACACATGTG TGCGCAAAGC ACATACTATT CATGTGAGCC CCCCACACAC ATATATACAT
  GGGGCACACA CACTCACATA CACACAAACA CAAGGACATA AAAGCTAGGG AGAAGAAATG
  TGTTCATGAA TGAGGGAGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136104541	ENSMUSSNP5917899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321029100	CHEV_3_152558615	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51136569					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152601288 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	122 bp upstream
Rr82809	regulatory region 82809	285 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates