rs51138141 SNP Detail

Summary

• ID
  rs51138141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82964451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGCAGT CACTGACTTA
  TTTTGCTGGC TTTGGTTTTT TGGGTTTTTT TTTTTTTTGT TGTTGTTGTT GTTGTTTTTT
  ACTTTTCCCC ACGGGTTCTA AGGTGTGTGT TGCTTAACCA GTCAGTCACC ATGCCTGAAT
  TCCAGGCAGC CGGAAGGAGG AGCAGAGGAG CGGAGGATGG TGCCCTGGCT TGGAAATCAG
  R
  ACTCCCCGGG CAATCCCCAG GGGCTCTCTA CTTATAGTTT GCTGGAAAGA GTGTGCCCTC
  GGCACCAGCT GGGAAGATTA GGAAATCGGT GTCTGTTCCC AATCAAAGTT TTTATCCTGA
  GTGAGGAACA GAAGCAACGC TGGACTCAAG TTTGTCTAAT CGTAGGATGC AGGTTCCTCA
  ATTGGTTCCT CTGATCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52389738	NES15267969	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51138141					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52389738	NES15267969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82964451 () rs orientation: forward

Symbol	Name	Function Class
Chst11	carbohydrate sulfotransferase 11	within coordinates
Gm67967	predicted gene, 67967	1564 bp upstream
Rr435927	regulatory region 435927	1787 bp distal
Rr435928	regulatory region 435928	1474 bp proximal