rs51139710 SNP Detail

Summary

• ID
  rs51139710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97143989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGTGCA TCGGTATGGA
  AGGGATTCGA TTATAGGAAA CATCTAAAAA TGTCAGATCA GCCAGCTTGA ACCTCCCAGT
  ATACAAATCC ATAGGGAACT GTGTGAGAAA GTTCCCACTC AGATAGAGTT TCTGCAAGTG
  GGAAAGCCCC CCGAACGCTG CGGGGTCCAG ATAGGAAATG TGGTTGTTGT ACAGCAGCAG
  Y
  ACTTCCAGAG CCTTCAGCTC TTGGAATGTG GCACTCTTTA CCGACTTCAG CCTATTGGAT
  GATAAGTCCA GACACTTTAA ATTTGGGGTT GTGGAGAAAC TGCCCGTGGA GATGCTGGTG
  ATGTTGTTGT GGCGAAGAAT TAAGGTGCTC AGCTTGACAA ACGACACCGG GATCCAGTCG
  GCATCCAACA GTCCGATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63609805	NES17042112	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51139710					SNP	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609805	NES17042112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97143989 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	within coordinates
Cpgi7615	CpG island 7615	517 bp distal
Cpgi7616	CpG island 7616	64 bp proximal
Gm57814	predicted gene, 57814	985 bp downstream
Pced1b	PC-esterase domain containing 1B	999 bp upstream
Rr312356	regulatory region 312356	within coordinates
Tssr132851	transcription start site region 132851	422 bp downstream
Tssr132852	transcription start site region 132852	850 bp upstream
Tssr132853	transcription start site region 132853	903 bp upstream
Tssr132854	transcription start site region 132854	1283 bp upstream
Tssr136109	transcription start site region 136109	1134 bp downstream
Tssr136110	transcription start site region 136110	1198 bp downstream