rs51140603 SNP Detail

Summary

• ID
  rs51140603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136497209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA ACATCTGTCA TTCATATGTA
  Y
  AGTTGCTTTT TTGGTTGCTT ATGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60953380	NES16181916	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C		C	C	T		C
ss133840285	ENSMUSSNP607479	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321996258	CHEV_6_136468732	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51140603					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60953380	NES16181916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136497209 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	within coordinates
Cpgi18104	CpG island 18104	871 bp distal
Gm44140	predicted gene, 44140	1495 bp upstream
Rr133547	regulatory region 133547	1609 bp distal
Rr145858	regulatory region 145858	within coordinates
Rr145859	regulatory region 145859	991 bp proximal
Rr400014	regulatory region 400014	1342 bp downstream
Rr400015	regulatory region 400015	945 bp downstream
Tssr59315	transcription start site region 59315	1401 bp downstream
Tssr59316	transcription start site region 59316	1360 bp downstream
Tssr59317	transcription start site region 59317	1336 bp downstream
Tssr59318	transcription start site region 59318	192 bp upstream
Tssr63803	transcription start site region 63803	1710 bp upstream
Tssr63804	transcription start site region 63804	1439 bp upstream
Tssr63805	transcription start site region 63805	1134 bp upstream