rs51140892 SNP Detail

Summary

• ID
  rs51140892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCTTTT ATAAGTAGCC
  AAGACAGACT GTAATGGGTA GTGTAAGCCA AATAAACTCT CCTCCCCAGG TTTGCTTTTT
  ATCACAGCAA ACTAAGATAC CTGTGGTTTT GGTCTTCAAC ACCGTCCGGA ACTGAGTCTC
  CTGGCTGTCG TCTTGGGTGC TATTTCCTCC TCCATCCCAC ACACTTCCGC TCTCGGTGGT
  Y
  CCTGAAAGAG ATGCAGGGCT GTTAGCCTCC CCGAATCACC AAACTCCTTT CTTTCCTGAG
  TCCCTCCTTC GTTCAATACC TCTCTGAGCA TTTGCTCCCC GCTCCAGAAA TTGTTAGCCT
  CTTGTGAGCC AGGAGTCAAC CATGGCCTTG TCCACCACAG AAGCCTAGCT ACAACAAAGT
  CTTAATTTGA GAGTCACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60847293	NES16004154	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs51140892					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847293	NES16004154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191068 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	1428 bp upstream
Tssr49319	transcription start site region 49319	1264 bp downstream
Tssr49320	transcription start site region 49320	1252 bp downstream
Tssr53954	transcription start site region 53954	1334 bp upstream
Tssr53955	transcription start site region 53955	1318 bp upstream
Tssr53956	transcription start site region 53956	1299 bp upstream
Tssr53957	transcription start site region 53957	1282 bp upstream
Tssr53958	transcription start site region 53958	1227 bp upstream
Tssr53959	transcription start site region 53959	1214 bp upstream
Tssr53960	transcription start site region 53960	1148 bp upstream
Tssr53961	transcription start site region 53961	1049 bp upstream
Tssr53962	transcription start site region 53962	1031 bp upstream
Tssr53963	transcription start site region 53963	992 bp upstream
Tssr53964	transcription start site region 53964	952 bp upstream
Tssr53965	transcription start site region 53965	927 bp upstream
Tssr53966	transcription start site region 53966	58 bp upstream
Tssr53967	transcription start site region 53967	25 bp upstream