rs51142002 SNP Detail

Summary

• ID
  rs51142002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180771726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TCCTTGGGAC AGCACTCCCT
  Y
  TGTGAGCATT TATGAGGATA TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146388115	ENSMUSSNP1012194	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320160478	CHEV_1_182874292	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51142002					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180771726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1127	CpG island 1127			949 bp distal
Cpgi1128	CpG island 1128			538 bp distal
Rr424646	regulatory region 424646			1692 bp distal
Rr424647	regulatory region 424647			551 bp distal
Rr424648	regulatory region 424648			116 bp distal
Rr424649	regulatory region 424649			128 bp distal
Rr424650	regulatory region 424650			within coordinates
Rr424651	regulatory region 424651			454 bp proximal
Tmem63a	transmembrane protein 63a			Intron
				Noncoding-Transcript-Variant
Tssr324	transcription start site region 324			90 bp downstream
Tssr10503	transcription start site region 10503			1809 bp downstream
Tssr10504	transcription start site region 10504			1793 bp downstream
Tssr10505	transcription start site region 10505			1716 bp downstream
Tssr10506	transcription start site region 10506			1684 bp downstream
Tssr10507	transcription start site region 10507			1632 bp downstream
Tssr10508	transcription start site region 10508			1737 bp upstream