rs51142167 SNP Detail

Summary

• ID
  rs51142167
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30842491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGTCTT CTCGGCCCTT GGGGCTTCTT TGCTCACAAC
  ACACATACCA CCATAAGAAT ACCTTCCATT TACTGACTTT TAAAAAATGA CTTATATGAA
  T
  GAGTGTTTTT CTTATATGTA TATGGGTGCA TGGGGAGAGT GCCCAGGGCT GGAGGAGGCC
  AGAACAGGGT ATCTGGTTCC CTAAAACTGG AGTTACAGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148700787	ENSMUSSNP3120044	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322139679	CHEV_7_31928085	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51142167					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30842491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	223 bp distal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645032	regulatory region 645032	1981 bp proximal
Tssr71945	transcription start site region 71945	434 bp upstream