rs51142466 SNP Detail

Summary

• ID
  rs51142466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:34078943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGACCT CCGGTCACAT
  AGCCAAGCCC CATCCATATC ATTGCTATCT CCTTGGGGCA GACGTGGACA GACAGGTGAC
  TTGGAAGAGC CCTTCTTAAG AAATAGAAGG CAGGGAAAAT GATTACTCAG TGGGCAGAGC
  ACTTGCCACA TAAGCCTAAG GGCCTGAGTT CAAATCCCCA GGATCTGCAT AAAGCCGGCT
  Y
  CAGTATGGAG TGTCCATAAT CCTACAACTA GTCCAGGAAG ATGGGAGGCA GAGGCGGGAG
  AACCACAGGA TGCTTGTGGA CTGTCTAGCC TGGTATGTAC AGTGGGGAAA AATATGAGAC
  TCAGTCCCAA ACAAGGTGGC CGGTGAGGGC TGATACCCTA TGTTGTCCTC TGACCACACA
  TATGTCACAG CACACACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139269638	ENSMUSSNP7178084	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51142466					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:34078943 () rs orientation: forward

Symbol	Name	Function Class
D14Mit45	DNA segment, Chr 14, Massachusetts Institute of Technology 45	260 bp proximal
Fam25a	family with sequence similarity 25, member A	1553 bp upstream
Tssr128061	transcription start site region 128061	1585 bp upstream
Tssr128062	transcription start site region 128062	1269 bp downstream