rs51143071 SNP Detail

Summary

• ID
  rs51143071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81016470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCAGGGTG CTGACCATTG TTCCCACAGT GCATCATTGA
  GGAGTCTGGA GAACATATTA TTGCTGGCGC CGGTGAGCTG CACCTGGAGA TCTGCCTTAA
  R
  GACCTGGAGG AGGACCATGC CTGCATCCCC ATCAAGGTGG GCACCAGAAT GGGCGTCTCA
  TCCTTCTGCC TATGTGCCTG AGGTGCTGCA CCATGTGCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388451	NES15267107	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51143071					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388451	NES15267107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81016470 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	1969 bp downstream
Cpgi1951	CpG island 1951	1911 bp proximal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	940 bp distal
Rr435546	regulatory region 435546	448 bp distal
Rr435547	regulatory region 435547	1879 bp proximal
Snord37	small nucleolar RNA, C/D box 37	1623 bp downstream
Tssr3283	transcription start site region 3283	1791 bp upstream
Tssr94699	transcription start site region 94699	1431 bp downstream
Tssr94700	transcription start site region 94700	1287 bp downstream
Tssr94701	transcription start site region 94701	1218 bp downstream
Tssr94702	transcription start site region 94702	1053 bp downstream
Tssr94703	transcription start site region 94703	988 bp downstream
Tssr94704	transcription start site region 94704	962 bp downstream
Tssr94705	transcription start site region 94705	897 bp downstream
Tssr94706	transcription start site region 94706	729 bp downstream
Tssr94707	transcription start site region 94707	674 bp downstream
Tssr94708	transcription start site region 94708	618 bp downstream
Tssr94709	transcription start site region 94709	360 bp downstream
Tssr94710	transcription start site region 94710	1764 bp upstream
Tssr98570	transcription start site region 98570	1223 bp upstream
Tssr98571	transcription start site region 98571	857 bp upstream