rs51143158 SNP Detail

Summary

• ID
  rs51143158
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170797119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGTCCA TTCCTGGTCC
  TGACCTGATA CTGAGCCCGG TTGCTGATCC ATTCAGAGCA GCTCCAGACA GACAAAGAGA
  CGGTGACAAA GAAGAGAGTG AGGAGATATA AAAAGAAGAC TTACCATGAG TCCCAGCAGC
  AAGATCTGTA AGAAAGGAAG TAAGCATCAA CCAGGGCCTT CTGTACTGAG ACATGCCTAC
  M
  CAGACCCAGA GCCCCAACTC ACTCCCACAG CCCACCCTTC AAGGCCTGGC CCTTCCCTGG
  GACTTCCTGG ATAAAGCACA CTTTCAGAGA TAATTAGGCC CCTTCCCCTT AGCATGTGTG
  TTGTGACACT TTAAAGGGCC AAACACCTTT GACTGCTAAG GCCCCGGTTG AAGTTTACAT
  AGAATTAGTG GTTTAGTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345255	NES15845028	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51143158					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345255	NES15845028	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170797119 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr16	DNA Segment, Chr 1, Derry C. Roopenian 16	313 bp proximal
D1Mit148	DNA segment, Chr 1, Massachusetts Institute of Technology 148	333 bp proximal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1119 bp distal
Rr25626	regulatory region 25626	984 bp proximal
Rr372438	regulatory region 372438	554 bp downstream
Tssr14958	transcription start site region 14958	1325 bp upstream