rs51143359 SNP Detail

Summary

• ID
  rs51143359
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12849775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGTGTG ATCTCCAGCT
  CCTACATGGA AAAAAATAAA CAGAAATAAA AAAGAAAAAG AAGAAATCTC AAATTAAAAA
  AACCAAATTT TTTAGAACTT TATTTATTTT CCCACTCATG ATTCTCATGA AGTTTAGAAA
  ATGAATGGAA GACATTATAT TATTTTGGAG TTGGTTAAAT TTCACCCTTG TCTACAGTTC
  K
  GGAAATTATA CCATTTTAAA TTTTAACAAA ATTTTAACAA AAGTTTCAAT AAATGAAAAC
  ATTCTCTTGG TGTATTTGCA CATTGTAAGA GGTGTAAAGT TGACCATGTT CTGGTTGTTC
  TGGGAAACAA ACAGAACAAC AGTTTTCTTT GGACCCACAG CCAAACTTGA AGTGGAGAAA
  GAGCCCAGGT TGGAGGTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806591	ENSMUSSNP3704137	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51143359					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12849775 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	774 bp upstream
Tssr92373	transcription start site region 92373	1672 bp upstream
Tssr96740	transcription start site region 96740	651 bp downstream
Tssr96741	transcription start site region 96741	1564 bp downstream