rs51143475 SNP Detail

Summary

• ID
  rs51143475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCTCAG CCATACCATT
  CCTCATGAGC CGCTGGTCTG CCCGCAACAA CTAAGTTCTG AGTTAATGGG AAAATATTGG
  CAGGAAGTGT TGGTATGCAG TTATGCACAT AGAGGAAGCA GCTTTACTTT AACTGGCCAA
  GCAAAGAATG GGAAAAGTAC AGAGAGATGA GGGGGTTGGT ATCTAGTGAC CCATAGCAAA
  Y
  CAACTGATAC TTGTGTCAAG AACATCATTT GATTAGTTTC ATTAGCCCCC TAAAATTAGT
  CACATTTCCA AAAGACCCCT CGAAAATCAT GAAGGTTTTT TCCCTTTCAC TGGAAAAGGA
  GTTAGAAATG GTGCTGGTTA TTTCAAGTGC TGCAATGAGT CACACGGGAA ATATTGTCAA
  ATCCAAAGAC GTTCACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52559990	NES15632458	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51143475					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559990	NES15632458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059856 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	475 bp upstream
Gm41331	predicted gene, 41331	259 bp downstream
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	397 bp distal
Tssr4605	transcription start site region 4605	798 bp upstream
Tssr134460	transcription start site region 134460	1110 bp upstream
Tssr134461	transcription start site region 134461	976 bp upstream
Tssr134462	transcription start site region 134462	874 bp upstream
Tssr134463	transcription start site region 134463	824 bp upstream
Tssr134464	transcription start site region 134464	724 bp upstream
Tssr134465	transcription start site region 134465	676 bp upstream
Tssr134466	transcription start site region 134466	667 bp upstream
Tssr134467	transcription start site region 134467	624 bp upstream
Tssr134468	transcription start site region 134468	592 bp upstream
Tssr134469	transcription start site region 134469	544 bp upstream