rs51143587 SNP Detail

Summary

• ID
  rs51143587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121664594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTGCAG TGTTCTTTTT
  ACACTCACAG AACAAGAGAC ACAGTGTGTC ACTGTAAAGG TTCTGGAAAT GGTGCTGATG
  GCCTCTACGC TATCCTTGGA CCCTGTCCAC ATCTCCATTC TTCACTCTCT ACTTTGTGAC
  TTCATTGTGA GACTAAGACG ACAGAAAATC ACGGGCCACA ATCTGGCACT GGCAGTTAAG
  Y
  CTAACCTAGA GCATCAAAGG AGACCAAAGA TACAGAACTT ACCATGTATC TGCTCACAGT
  GTCTGTATTT CCTAGTAATG TGGACTCATT TATATAATGT ACTTAAAAAA CAAATCACAA
  GCTAATCTAA TCCTCTTGTC GCGCACACAC ACACACACAC ACACACACAC ACACACACAC
  ACGCAGAACA TTAGTAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60833803	NES16021438	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C		C	C	T	C
ss321668148	CHEV_5_121976540	CHEVERUD	SCREENING_POP	f	SNP					C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs51143587					SNP	T	T	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60833803	NES16021438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121664594 () rs orientation: forward

Symbol	Name	Function Class
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	within coordinates
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	1407 bp proximal
Rr130931	regulatory region 130931	387 bp distal
Tssr48584	transcription start site region 48584	968 bp downstream
Tssr53036	transcription start site region 53036	693 bp downstream
Tssr53037	transcription start site region 53037	729 bp downstream