rs51143715 SNP Detail

Summary

• ID
  rs51143715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57532016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACGCCCC CCCCCCATGC
  GTCACCCCCA TCCTCACTTG GCTATGATGG AAACTTCCAG GCCATTTGGG TCATCGATGT
  AATAAAATGT CTCTGTGGGC TCCACCCGGA CCTCAAAACT GGGCAGCACT AGGATGGGGT
  ATGAAGACGA TGGTGTTGGC ATGGCTGCCA GGGCAGCATA AGCACAAGGG CCTCACCTGC
  Y
  GGATGCCCCA AGACTTACCG TATTCCTTCA CCTCAAACTC TGCGGAGAAG ATCTGCTTCG
  GCGCATGTTC GTAAAAGGCT CGGATCTTCC ACTGCCCCAT GCTGCAAGAA GATGAGGAAT
  GTGGCAGAGC CTCCAAGAGC CTCTCCCCCA TCTCTCCCCC CGGACGGGGG AATCCCGTTT
  TTTGGAGGCT CAGATTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812190	NES17355699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51143715					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812190	NES17355699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57532016 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	201 bp distal
Tssr145378	transcription start site region 145378	1881 bp downstream
Tssr145379	transcription start site region 145379	1806 bp downstream
Tssr145380	transcription start site region 145380	1761 bp downstream
Tssr145381	transcription start site region 145381	1707 bp downstream
Tssr145382	transcription start site region 145382	1153 bp downstream
Tssr145383	transcription start site region 145383	1076 bp downstream
Tssr145384	transcription start site region 145384	906 bp downstream
Tssr145385	transcription start site region 145385	233 bp upstream
Tssr145386	transcription start site region 145386	1009 bp upstream
Tssr145387	transcription start site region 145387	1240 bp upstream
Tssr145388	transcription start site region 145388	1822 bp upstream
Tssr148947	transcription start site region 148947	1817 bp upstream
Tssr148948	transcription start site region 148948	1733 bp upstream
Tssr148949	transcription start site region 148949	1677 bp upstream
Tssr148950	transcription start site region 148950	1123 bp upstream
Tssr148951	transcription start site region 148951	1094 bp upstream
Tssr148952	transcription start site region 148952	1034 bp upstream
Tssr148953	transcription start site region 148953	853 bp upstream
Tssr148954	transcription start site region 148954	828 bp upstream
Tssr148955	transcription start site region 148955	683 bp upstream
Tssr148956	transcription start site region 148956	650 bp upstream
Tssr148957	transcription start site region 148957	64 bp upstream
Tssr148958	transcription start site region 148958	87 bp downstream
Tssr148959	transcription start site region 148959	247 bp downstream
Tssr148960	transcription start site region 148960	1001 bp downstream
Tssr148961	transcription start site region 148961	1038 bp downstream
Tssr148962	transcription start site region 148962	1184 bp downstream
Tssr148963	transcription start site region 148963	1236 bp downstream
Tssr148964	transcription start site region 148964	1269 bp downstream
Tssr148965	transcription start site region 148965	1780 bp downstream
Tssr148966	transcription start site region 148966	1797 bp downstream