rs51144406 SNP Detail

Summary

• ID
  rs51144406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185416024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACTAT GGGCTATACA
  GTGAGTTCCA GATTAGCCTG GGCCACAGAA TGAGACCTTA AGAAACCATG ATGATAATAT
  GTGCATGGTT TTACACACAC ACACACACAC CACACACACA CCACACACAC ACACACAGTT
  TTTGAGGAAG ACTGAGGCCT CTGGAATTGT GGAACTAAGA ACCTACCTTC TCATTCAAAA
  M
  CTTTTTCTGT TCTTCACGTA TGTTTTCCTC CCTCGCCCTT CTCATTTCTT TCCCCACAAT
  TACCAAAGTC TCTTCTTACA ATTCCTGCTT GATAGTGATT TAAGAACACT TAATTTCCAG
  TATGAAGTGA AGTGTAGATT GGTGATTTCT AGACTTAGTT ACAGTATGGG TTGTTTTCAG
  CCACCTAGGG CCCTGTCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440047	ENSMUSSNP1053813	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320178623	CHEV_1_187507706	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51144406					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185416024 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	1267 bp distal
Rr425421	regulatory region 425421	1719 bp distal
Rr425422	regulatory region 425422	971 bp proximal
Rr425423	regulatory region 425423	1159 bp proximal