rs51144540 SNP Detail

Summary

• ID
  rs51144540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:15418358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTATCA GGAGGTGGCA
  CCTCACTACC AGTACTACTC TCTCCAAGCC TCCTGGTGAG ATCCATGCAG CCCCGGGGCC
  ACGACTCTGG GCTTTGCCAG CACAGACCCT GTTCATCCTG AGCGCTCCAC AGAGGGCTGT
  CTCCGTCCAT TGATGTCTGT TCATTCAGAG CCTTCTAGAA GTGTGCGAAG AAACCTCGAG
  Y
  CGCCCTGTGT GGAGAACACC TAGACTAAAT CTTGGTAGAC ACAGGCCAAG TAAGGCTGGA
  CCCTAGTCCC ACAAGAGACC TTGTGGAGTG CCTGCTATTA CTGGCCAATG ACAGGTAGTT
  CCTGCAAGCT CTCTGATTCT CAGCATCCTC ATTTGAAATG TGACCCTCTC CACCGTCAAC
  GTATATCTAA CTGGGATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60539082	NES16556335	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51144540					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60539082	NES16556335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:15418358 () rs orientation: forward

Symbol	Name	Function Class
Gm35502	predicted gene, 35502	within coordinates
Rr329518	regulatory region 329518	643 bp proximal
Rr334312	regulatory region 334312	443 bp proximal
Rr340587	regulatory region 340587	1959 bp distal