ATCTCTATCA GGAGGTGGCA CCTCACTACC AGTACTACTC TCTCCAAGCC TCCTGGTGAG ATCCATGCAG CCCCGGGGCC ACGACTCTGG GCTTTGCCAG CACAGACCCT GTTCATCCTG AGCGCTCCAC AGAGGGCTGT CTCCGTCCAT TGATGTCTGT TCATTCAGAG CCTTCTAGAA GTGTGCGAAG AAACCTCGAG Y CGCCCTGTGT GGAGAACACC TAGACTAAAT CTTGGTAGAC ACAGGCCAAG TAAGGCTGGA CCCTAGTCCC ACAAGAGACC TTGTGGAGTG CCTGCTATTA CTGGCCAATG ACAGGTAGTT CCTGCAAGCT CTCTGATTCT CAGCATCCTC ATTTGAAATG TGACCCTCTC CACCGTCAAC GTATATCTAA CTGGGATGGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60539082 | NES16556335 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs51144540 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60539082 | NES16556335 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr17:15418358 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm35502 | predicted gene, 35502 | within coordinates | ||||||
Rr329518 | regulatory region 329518 | 643 bp proximal | ||||||
Rr334312 | regulatory region 334312 | 443 bp proximal | ||||||
Rr340587 | regulatory region 340587 | 1959 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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