rs51144673 SNP Detail

Summary

• ID
  rs51144673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60731588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAATTA TTAATCTCTT
  AGTAAAAGTA CTCTTCAAAT CGTATTAGAA ACTTTAATTT TGCCTCTTGA CTGGACTACA
  AATCGAGAAG ATGACTGCTC TACTTGGCGT GTAAAGTTAA GATCATACAT GCCTGGAGGT
  CCAGCTGCTT AACTGGGTCA GCGTGCAGTG GAAGGGCTTC AGAGCAGTAC TATTTTGAAT
  R
  GGAGAGCCTA GTATCTCAAG CCTGCAAGGC AATCACTTTC CCCAATAAGC CTTCGCCTCA
  GCTCCCATAG GGAATTCTCT TTCACCTAAA GGGATGAGTA GCTCTCTTAA AAAATTTCAA
  AACATCTATT TCCTGTCCCG TTGCTTTTGT TGTTGTTTTA TACTTTATTA GCATTTTTTT
  TAAATAAAAG AGACTCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146652191	ENSMUSSNP1475600	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51144673					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60731588 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	145 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr557735	regulatory region 557735	192 bp proximal
Rr557736	regulatory region 557736	610 bp proximal
Rr557737	regulatory region 557737	1307 bp proximal
Tssr17890	transcription start site region 17890	701 bp upstream
Tssr24237	transcription start site region 24237	1518 bp downstream
Tssr24238	transcription start site region 24238	1590 bp downstream