rs51145731 SNP Detail

Summary

• ID
  rs51145731
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152601289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTACTTT ATACATGAAC
  AGAAACTGAG ATAAAAATGG ACAACTTCCT AGGACAATGT AATTTATCAA ATATAATCCA
  GATTCTAAAG AAACCTAATG GTCTACATTT TATAGGAAAA CAAAACTAAA GATGTAAAGA
  ACCATCTGTT CCCGGAAAAG ATGAGCACAG GACACAGGCT CAGCCTCTGA GGAGCCCTCC
  G
  ACTCAGGAAG ACAAATGCCT TTGCTTATTC TCATATGTGG GACTTTGAAA GTACATGCTC
  ACACATGTGT GCGCAAAGCA CATACTATTC ATGTGAGCCC CCCACACACA TATATACATG
  GGGCACACAC ACTCACATAC ACACAAACAC AAGGACATAA AAGCTAGGGA GAAGAAATGT
  GTTCATGAAT GAGGGAGGGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136104546	ENSMUSSNP2155402	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321029101	CHEV_3_152558616	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51145731					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152601289 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	121 bp upstream
Rr82809	regulatory region 82809	286 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates