rs51146538 SNP Detail

Summary

• ID
  rs51146538
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTTCC CTTCCCTTCC
  CTTCCCTTCC CTTCCCTTCC CTTCCCTTCT TTCTTTCTTT CTTTTTTTTG TTTTGGTTTT
  TCGAGATAGG ATTTCTCTGT GTAGTCCTGG CTGTCCAGGA ACTCACTTTG TAGCCAGGCT
  GGCCTCGAAC TCAGAAATCC ACCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGC
  A
  CCACCACGCC CGGTCAGGCC TTTTTCTTAA AGCTTGAGCT GCTGGCGCTG TTTCTGGAAT
  CCTCCGTGTG GCTGTGGACA GGCACATTTC TGGGGGTATT CTGCTGAAGG GAGGCTGAGG
  GGCCATGCGT GTGCGCGCGT GTGTGTGCGT GTGTAGTAGT AGTAGTAGTA GTAGTAGTAG
  TAGTAGTAGT AGTAGTAGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145717361	ENSMUSSNP7107646	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51146538					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769994 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	632 bp downstream
Rr528303	regulatory region 528303	1270 bp distal
Tssr145120	transcription start site region 145120	557 bp downstream
Unc5cl	unc-5 family C-terminal like	within coordinates